Plasmodium falciparum
- Tandem Repeat Analysis
Protocol
Experimental procedure
The file p_falciparum.fasta corresponds to the frozen data (November 23, 2004
http://plasmodb.org/restricted/data/P_falciparum/WG/nuc/
) of
Plasmodium falciparum
genome.
Genome sequence FASTA file
Genome complexity - 23,042,330 bp
The file was submitted to Tandem Repeats Finder (TRF) (
Benson, 1999
) program using the following parameters:
2 5 7 80 10 25 1000.
TRF output files were analyzed by the Tandem Repeat Analysis Program (TRAP) using the following parameters:
Minimum period size of repeats - 1
Maximum period size of repeats - 6
Minimum identity percentage - 90
Create HTML - yes
Sorting - according to the total number of bases